Variant report

Variant	rs2632139
Chromosome Location	chr5:113446048-113446049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10038171	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078819	1.00[ASN][1000 genomes]
rs10078889	1.00[ASN][1000 genomes]
rs10478151	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487227	1.00[YRI][hapmap]
rs2416355	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2954365	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645324	1.00[ASN][1000 genomes]
rs7703847	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7703859	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7726250	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1020064	chr5:113418512-113492951	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113443000-113446200	Weak transcription	Fetal Heart	heart
2	chr5:113445600-113453200	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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