Variant report

Variant	rs2955905
Chromosome Location	chr8:39873478-39873479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10090043	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13255021	1.00[AMR][1000 genomes]
rs13257182	1.00[AMR][1000 genomes]
rs2929118	1.00[AMR][1000 genomes]
rs2955894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955896	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955897	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955899	0.90[AFR][1000 genomes]
rs2955900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2981159	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2981160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2981161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2981162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4314635	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4469437	1.00[AMR][1000 genomes]
rs4559228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4633046	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56976900	1.00[AMR][1000 genomes]
rs59381479	1.00[AMR][1000 genomes]
rs6474203	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7011669	1.00[AMR][1000 genomes]
rs73605143	1.00[AMR][1000 genomes]
rs73605152	1.00[AMR][1000 genomes]
rs7826266	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020859	chr8:39857347-39877897	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv611087	chr8:39865891-39884574	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv611088	chr8:39869841-39880766	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39868000-39879400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:39869600-39874400	Weak transcription	Right Ventricle	heart
3	chr8:39870200-39873600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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