Variant report

Variant	rs6474203
Chromosome Location	chr8:39876177-39876178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10090043	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13255021	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13257182	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2929118	1.00[AMR][1000 genomes]
rs2955871	0.80[AFR][1000 genomes]
rs2955894	1.00[AMR][1000 genomes]
rs2955896	1.00[AMR][1000 genomes]
rs2955897	1.00[AMR][1000 genomes]
rs2955898	1.00[AMR][1000 genomes]
rs2955900	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955901	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955904	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955905	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955906	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2981159	1.00[AMR][1000 genomes]
rs2981160	1.00[AMR][1000 genomes]
rs2981161	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2981162	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4314635	1.00[AMR][1000 genomes]
rs4469437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4559228	1.00[AMR][1000 genomes]
rs4625021	0.89[AFR][1000 genomes]
rs4633046	1.00[AMR][1000 genomes]
rs56976900	1.00[AMR][1000 genomes]
rs59381479	1.00[AMR][1000 genomes]
rs7011669	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73605143	1.00[AMR][1000 genomes]
rs73605152	1.00[AMR][1000 genomes]
rs7826266	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020859	chr8:39857347-39877897	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv611087	chr8:39865891-39884574	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv611088	chr8:39869841-39880766	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39868000-39879400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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