Variant report

Variant	rs2957187
Chromosome Location	chr11:56842389-56842390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2957186	1.00[AFR][1000 genomes]
rs2957191	1.00[AFR][1000 genomes]
rs2957192	1.00[AFR][1000 genomes]
rs3017311	1.00[AFR][1000 genomes]
rs3017325	1.00[AFR][1000 genomes]
rs3017561	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56840200-56851600	Weak transcription	Spleen	Spleen
2	chr11:56841200-56842400	Weak transcription	NH-A	brain
3	chr11:56841200-56842600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:56841800-56842800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:56842000-56842600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:56842000-56842600	Enhancers	Osteobl	bone
7	chr11:56842200-56842400	Enhancers	HSMMtube	muscle
8	chr11:56842200-56842800	ZNF genes & repeats	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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