Variant report

Variant	rs3017311
Chromosome Location	chr11:56863138-56863139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2957186	1.00[AFR][1000 genomes]
rs2957187	1.00[AFR][1000 genomes]
rs2957191	1.00[AFR][1000 genomes]
rs2957192	1.00[AFR][1000 genomes]
rs3017320	1.00[YRI][hapmap]
rs3017325	1.00[AFR][1000 genomes]
rs3017561	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56856000-56864800	Weak transcription	Fetal Lung	lung
2	chr11:56861000-56863600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:56861400-56864000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:56861800-56864800	Weak transcription	Fetal Stomach	stomach
5	chr11:56862000-56863200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:56862000-56863200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:56862000-56865400	Weak transcription	Fetal Heart	heart
8	chr11:56863000-56863200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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