Variant report

Variant	rs2959284
Chromosome Location	chr15:52326555-52326556
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52313118..52316334-chr15:52326063..52329741,3	K562	blood:
2	chr15:52311192..52314853-chr15:52323962..52330649,8	K562	blood:

Variant related genes	Relation type
ENSG00000259438	Chromatin interaction
ENSG00000069956	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2470597	0.82[ASN][1000 genomes]
rs2959280	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2959281	1.00[AMR][1000 genomes]
rs4502161	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7167709	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv1050664	chr15:52265723-52342101	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv530681	chr15:52297253-52390470	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv984198	chr15:52319726-52481137	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52312800-52345400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:52313800-52329400	Weak transcription	Fetal Heart	heart
3	chr15:52314400-52359800	Weak transcription	Fetal Brain Male	brain
4	chr15:52314600-52330600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:52314600-52332200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:52314800-52329400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:52314800-52330200	Weak transcription	Ovary	ovary
8	chr15:52314800-52330200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:52314800-52331200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:52315200-52331800	Weak transcription	Colonic Mucosa	Colon
11	chr15:52315600-52329400	Weak transcription	Right Atrium	heart
12	chr15:52315600-52332200	Weak transcription	NHLF	lung
13	chr15:52315800-52328400	Weak transcription	Adipose Nuclei	Adipose
14	chr15:52316000-52330400	Weak transcription	Psoas Muscle	Psoas
15	chr15:52316000-52330600	Weak transcription	Pancreas	Pancrea
16	chr15:52316000-52332200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:52317400-52330600	Weak transcription	Small Intestine	intestine
18	chr15:52317400-52332200	Weak transcription	Lung	lung
19	chr15:52321200-52328200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:52321200-52332200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:52321400-52331800	Weak transcription	Primary T cells from cord blood	blood
22	chr15:52322400-52327400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr15:52322400-52328200	Weak transcription	Liver	Liver
24	chr15:52322400-52329400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr15:52322400-52330200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr15:52322400-52331400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:52322400-52332200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:52322400-52332200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:52322600-52328200	Weak transcription	Brain Substantia Nigra	brain
30	chr15:52322600-52328400	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:52322600-52329400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:52322600-52329600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:52322600-52329800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:52322600-52329800	Weak transcription	Brain Anterior Caudate	brain
35	chr15:52322600-52330600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:52322800-52331200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:52322800-52331400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:52322800-52331400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:52322800-52332400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr15:52323800-52327200	ZNF genes & repeats	Fetal Intestine Small	intestine
41	chr15:52324000-52327000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:52324600-52327200	ZNF genes & repeats	Fetal Muscle Leg	muscle
43	chr15:52324800-52326600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
44	chr15:52324800-52326800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
45	chr15:52324800-52326800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:52324800-52327000	ZNF genes & repeats	Fetal Stomach	stomach
47	chr15:52324800-52327200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:52324800-52328200	Weak transcription	NHEK	skin
49	chr15:52325000-52326600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:52325000-52326800	ZNF genes & repeats	Fetal Brain Female	brain

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