Variant report

Variant	rs2959879
Chromosome Location	chr11:63577818-63577819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr11:63577759-63578308	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63577221..63582686-chr11:63583021..63587487,9	MCF-7	breast:

Variant related genes	Relation type
C11orf84	TF binding region
ENSG00000168005	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs480464	0.83[AFR][1000 genomes]
rs551839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594188	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118198	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv3413647	chr11:63550425-63582789	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63567600-63580000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:63570600-63578600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:63570600-63579200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:63570600-63580000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:63570800-63578800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:63571000-63578800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:63571000-63578800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:63571000-63580000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:63571000-63580000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:63571000-63580000	Weak transcription	A549	lung
11	chr11:63571200-63578600	Weak transcription	K562	blood
12	chr11:63571200-63578800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:63571800-63580000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:63572000-63578800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:63572000-63580000	Weak transcription	Osteobl	bone
16	chr11:63572200-63580000	Weak transcription	HMEC	breast
17	chr11:63572400-63580000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:63572600-63580000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:63572600-63580200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:63572800-63580000	Weak transcription	Colonic Mucosa	Colon
21	chr11:63573800-63580000	Weak transcription	Ovary	ovary
22	chr11:63573800-63580200	Weak transcription	Left Ventricle	heart
23	chr11:63574000-63580000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:63574000-63580200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:63575200-63579000	Weak transcription	Hela-S3	cervix
26	chr11:63575200-63580000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:63575400-63580000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:63575800-63580200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:63577400-63579000	Enhancers	Placenta	Placenta
30	chr11:63577400-63579000	Enhancers	HepG2	liver
31	chr11:63577800-63578000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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