Variant report

Variant	rs2960719
Chromosome Location	chr10:117520504-117520505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2532699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2804154	1.00[YRI][hapmap]
rs2804162	0.90[AFR][1000 genomes]
rs2907516	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907544	0.90[AFR][1000 genomes]
rs2907547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907549	0.80[AFR][1000 genomes]
rs2907586	0.85[YRI][hapmap]
rs2907587	0.85[YRI][hapmap]
rs2907588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960645	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960663	0.82[YRI][hapmap]
rs2960714	1.00[YRI][hapmap]
rs2960725	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960726	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3110771	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904830	0.82[YRI][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117489400-117520800	Weak transcription	HSMM	muscle
2	chr10:117520000-117521600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:117520200-117520600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:117520200-117520800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:117520200-117521000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:117520200-117521200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:117520400-117520600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:117520400-117520800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:117520400-117521000	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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