Variant report
| Variant | rs2962256 |
|---|---|
| Chromosome Location | chr5:50404005-50404006 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:50402647..50404980-chr5:50406854..50409062,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10472113 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13358185 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2069021 | 0.84[ASN][1000 genomes] |
| rs2961812 | 0.84[ASN][1000 genomes] |
| rs2961813 | 0.88[ASN][1000 genomes] |
| rs2961814 | 0.88[ASN][1000 genomes] |
| rs2961815 | 0.88[ASN][1000 genomes] |
| rs2961833 | 0.88[ASN][1000 genomes] |
| rs2961834 | 0.88[ASN][1000 genomes] |
| rs2962249 | 0.84[ASN][1000 genomes] |
| rs2962250 | 0.84[ASN][1000 genomes] |
| rs2962251 | 0.84[ASN][1000 genomes] |
| rs2962252 | 0.84[ASN][1000 genomes] |
| rs2962258 | 0.95[ASN][1000 genomes] |
| rs34457218 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs55655243 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62365360 | 0.81[ASN][1000 genomes] |
| rs62365368 | 0.81[ASN][1000 genomes] |
| rs62365371 | 0.84[ASN][1000 genomes] |
| rs62368785 | 0.81[ASN][1000 genomes] |
| rs6450535 | 0.88[ASN][1000 genomes] |
| rs73752825 | 0.81[ASN][1000 genomes] |
| rs7445634 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7720791 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9292204 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034445 | chr5:49986171-50492609 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv830287 | chr5:50380059-50509674 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:50403400-50404600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
