Variant report
Variant | rs9292204 |
---|---|
Chromosome Location | chr5:50356930-50356931 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:50330344..50330970-chr5:50356470..50357101,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10472113 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs13358185 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1345777 | 0.86[JPT][hapmap] |
rs2069021 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes] |
rs2961812 | 0.88[ASN][1000 genomes] |
rs2961813 | 0.84[ASN][1000 genomes] |
rs2961814 | 0.84[ASN][1000 genomes] |
rs2961815 | 0.84[ASN][1000 genomes] |
rs2961833 | 0.84[ASN][1000 genomes] |
rs2961834 | 0.84[ASN][1000 genomes] |
rs2962249 | 0.88[ASN][1000 genomes] |
rs2962250 | 0.88[ASN][1000 genomes] |
rs2962251 | 0.88[ASN][1000 genomes] |
rs2962252 | 0.88[ASN][1000 genomes] |
rs2962256 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2962258 | 0.88[ASN][1000 genomes] |
rs34457218 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4429809 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs55655243 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs62365360 | 0.91[ASN][1000 genomes] |
rs62365368 | 0.91[ASN][1000 genomes] |
rs62365371 | 0.88[ASN][1000 genomes] |
rs62368785 | 0.91[ASN][1000 genomes] |
rs6450535 | 0.84[ASN][1000 genomes] |
rs73752825 | 0.91[ASN][1000 genomes] |
rs7445634 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7720791 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1034445 | chr5:49986171-50492609 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv830286 | chr5:50165805-50374600 | Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:50356800-50357000 | Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |