Variant report

Variant	rs2962380
Chromosome Location	chr5:90941201-90941202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10071476	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1566996	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2202508	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2657819	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35013513	0.88[EUR][1000 genomes]
rs35662958	0.87[EUR][1000 genomes]
rs36016458	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4355554	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2962380	C5orf36	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90936600-90942800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:90941000-90941600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:90941000-90947200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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