Variant report

Variant	rs1566996
Chromosome Location	chr5:90945677-90945678
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10071476	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12186681	0.81[EUR][1000 genomes]
rs2657819	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2935250	0.81[EUR][1000 genomes]
rs2939242	0.81[EUR][1000 genomes]
rs2939261	0.81[EUR][1000 genomes]
rs2962380	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36016458	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4355554	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7726364	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830394	chr5:90944049-91107749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1566996	C5orf36	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90941000-90947200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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