Variant report

Variant	rs2964901
Chromosome Location	chr14:79486337-79486338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1531624	1.00[YRI][hapmap]
rs154430	1.00[AMR][1000 genomes]
rs1871487	1.00[YRI][hapmap]
rs215504	1.00[YRI][hapmap]
rs215515	1.00[YRI][hapmap]
rs2170048	1.00[YRI][hapmap]
rs2199795	1.00[YRI][hapmap]
rs257203	1.00[AMR][1000 genomes]
rs257204	1.00[AMR][1000 genomes]
rs257205	1.00[AMR][1000 genomes]
rs2653552	1.00[YRI][hapmap]
rs2938025	1.00[AMR][1000 genomes]
rs2938026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938027	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938028	1.00[AMR][1000 genomes]
rs2964899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs31402	1.00[AMR][1000 genomes]
rs31403	1.00[YRI][hapmap]
rs7157541	1.00[YRI][hapmap]
rs8007547	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1046464	chr14:79478352-79514789	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv1036542	chr14:79478352-79518230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79483800-79487800	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:79484200-79487400	Weak transcription	HSMMtube	muscle
3	chr14:79485600-79494600	Weak transcription	HUVEC	blood vessel
4	chr14:79486000-79487600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr14:79486200-79487200	Weak transcription	HSMM	muscle
6	chr14:79486200-79487800	Weak transcription	NHLF	lung

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