Variant report

Variant	rs154430
Chromosome Location	chr14:79459010-79459011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11845182	1.00[MEX][hapmap]
rs150784	1.00[MEX][hapmap]
rs150785	1.00[MEX][hapmap]
rs150787	1.00[MEX][hapmap]
rs2202178	1.00[MEX][hapmap]
rs257203	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs257204	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs257205	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2620392	1.00[MEX][hapmap]
rs2620393	1.00[MEX][hapmap]
rs2620396	1.00[MEX][hapmap]
rs2653540	1.00[MEX][hapmap]
rs2653547	1.00[MEX][hapmap]
rs2653550	1.00[MEX][hapmap]
rs2653551	1.00[MEX][hapmap]
rs2938025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938026	1.00[AMR][1000 genomes]
rs2938027	1.00[AMR][1000 genomes]
rs2938028	1.00[AMR][1000 genomes]
rs2964899	1.00[AMR][1000 genomes]
rs2964901	1.00[AMR][1000 genomes]
rs2964908	1.00[MEX][hapmap]
rs31402	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5023075	1.00[MEX][hapmap]
rs6574489	1.00[MEX][hapmap]
rs6574497	1.00[MEX][hapmap]
rs7143117	1.00[MEX][hapmap]
rs8015420	1.00[MEX][hapmap]
rs8015502	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041198	chr14:79452019-79482977	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79454200-79471800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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