Variant report

Variant	rs296728
Chromosome Location	chr9:93747759-93747760
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93747237..93748168-chr9:94195170..94195802,2	MCF-7	breast:
2	chr9:93746930..93749151-chr9:93751663..93753476,2	K562	blood:
3	chr9:93747233..93748142-chr9:94438060..94438937,2	MCF-7	breast:
4	chr9:93741971..93744246-chr9:93747645..93749685,2	K562	blood:
5	chr9:93747606..93748158-chr9:94188161..94189045,2	MCF-7	breast:
6	chr9:93746985..93748107-chr9:94187952..94189158,7	MCF-7	breast:
7	chr9:93675804..93678355-chr9:93746477..93748516,2	MCF-7	breast:
8	chr9:93676448..93679298-chr9:93745001..93748121,3	MCF-7	breast:
9	chr9:93747583..93748169-chr9:94186299..94187124,2	MCF-7	breast:
10	chr9:93747626..93749444-chr9:93797575..93800020,2	MCF-7	breast:
11	chr9:93747219..93748073-chr9:94195149..94195713,2	MCF-7	breast:
12	chr9:93747037..93749166-chr9:93752714..93754815,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1380953	0.82[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs16907055	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs296719	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs296722	0.83[ASN][1000 genomes]
rs296725	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35401550	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs368754	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93742000-93747800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:93746200-93748800	Enhancers	Dnd41	blood
3	chr9:93747000-93747800	Enhancers	NHEK	skin
4	chr9:93747000-93751000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:93747600-93748000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr9:93747600-93748000	Enhancers	HepG2	liver
7	chr9:93747600-93748800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:93747600-93748800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:93747600-93749000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr9:93747600-93750600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:93747600-93750800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:93747600-93751000	Enhancers	HMEC	breast
13	chr9:93747600-93751200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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