Variant report

Variant	rs368754
Chromosome Location	chr9:93724516-93724517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93723393..93725227-chr9:94195689..94197370,2	MCF-7	breast:
2	chr9:93723955..93726511-chr9:94076092..94077713,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12352804	0.89[MKK][hapmap]
rs1380953	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs296725	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs296728	0.82[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs715728	0.93[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs368754	WNK2	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93718800-93726800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:93718800-93727200	Weak transcription	NHEK	skin
3	chr9:93721200-93726600	Weak transcription	Esophagus	oesophagus
4	chr9:93721200-93726600	Weak transcription	Ovary	ovary
5	chr9:93721600-93726400	Weak transcription	Stomach Mucosa	stomach
6	chr9:93722400-93724600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr9:93722800-93724800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:93722800-93724800	Enhancers	Fetal Heart	heart
9	chr9:93723000-93726600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:93723600-93725400	Enhancers	Aorta	Aorta
11	chr9:93723800-93724600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:93724200-93726200	Weak transcription	Osteobl	bone
13	chr9:93724200-93726400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:93724200-93726400	Weak transcription	NH-A	brain
15	chr9:93724200-93726400	Weak transcription	NHDF-Ad	bronchial
16	chr9:93724200-93726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:93724200-93726600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:93724200-93726600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:93724200-93726600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:93724200-93728000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:93724200-93728200	Weak transcription	HMEC	breast
22	chr9:93724200-93728600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:93724200-93736000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:93724400-93728600	Weak transcription	Muscle Satellite Cultured Cells	--

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