Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:55309144..55311661-chr2:55314427..55318457,3	K562	blood:
2	chr2:55311726..55313252-chr2:55313684..55315379,2	K562	blood:
3	chr2:55313997..55316994-chr2:55461231..55462844,2	K562	blood:
4	chr2:55277836..55279728-chr2:55313964..55316621,2	K562	blood:
5	chr2:55306855..55308642-chr2:55313983..55316213,2	K562	blood:
6	chr2:55312676..55314647-chr2:55325733..55328474,2	K562	blood:
7	chr2:55306577..55308531-chr2:55314255..55316855,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11674808	0.85[ASN][1000 genomes]
rs13011689	0.86[ASN][1000 genomes]
rs2860453	1.00[YRI][hapmap]
rs2920862	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920878	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2968790	0.81[ASN][1000 genomes]
rs2968793	0.86[ASN][1000 genomes]
rs2968794	0.87[ASW][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs2968795	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs2968822	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2968825	0.94[ASN][1000 genomes]
rs2968827	0.89[ASN][1000 genomes]
rs2972070	0.90[ASN][1000 genomes]
rs2972071	0.90[ASN][1000 genomes]
rs2972072	0.86[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs2972075	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2968798	RTN4	cis	Artery Tibial	GTEx
rs2968798	RTN4	cis	Artery Aorta	GTEx
rs2968798	C2orf63	cis	cerebellum	SCAN
rs2968798	RTN4	cis	Whole Blood	GTEx
rs2968798	RTN4	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55299200-55318000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:55309200-55315200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:55311200-55314800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:55312000-55316800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr2:55312000-55317400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:55312000-55321200	Weak transcription	Lung	lung
7	chr2:55313400-55314800	Enhancers	Fetal Heart	heart
8	chr2:55314200-55315000	Enhancers	K562	blood
9	chr2:55314200-55315400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr2:55314200-55316000	Enhancers	Fetal Lung	lung
11	chr2:55314400-55315400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:55314400-55315400	Enhancers	A549	lung
13	chr2:55314600-55314800	Enhancers	HSMM	muscle
14	chr2:55314600-55315000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:55314600-55315000	Enhancers	Hela-S3	cervix
16	chr2:55314600-55315400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr2:55314600-55315400	Enhancers	Brain Angular Gyrus	brain
18	chr2:55314600-55315400	Enhancers	Brain Cingulate Gyrus	brain
19	chr2:55314600-55315400	Enhancers	Brain Hippocampus Middle	brain
20	chr2:55314600-55315600	Enhancers	HUVEC	blood vessel
21	chr2:55314600-55315600	Enhancers	NHLF	lung
22	chr2:55314600-55316000	Enhancers	Brain Substantia Nigra	brain
23	chr2:55314600-55318400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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