Variant report

Variant	rs2968822
Chromosome Location	chr2:55307811-55307812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55306855..55308642-chr2:55313983..55316213,2	K562	blood:
2	chr2:55306577..55308531-chr2:55314255..55316855,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10210840	0.85[CEU][hapmap]
rs11674808	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12713284	0.85[CEU][hapmap]
rs13011689	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13387751	0.85[CEU][hapmap]
rs2580772	0.85[CEU][hapmap]
rs2860453	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs2919129	0.81[CEU][hapmap]
rs2920862	0.91[CHB][hapmap];0.96[JPT][hapmap];0.96[ASN][1000 genomes]
rs2920878	0.89[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2920900	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2968790	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2968793	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2968794	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2968795	0.89[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2968798	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2968825	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2968827	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2972070	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2972071	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2972072	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2972075	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2972097	0.82[CEU][hapmap]
rs6545466	0.82[CEU][hapmap]
rs6755468	0.85[CEU][hapmap]
rs6760429	0.82[CEU][hapmap]
rs7340476	0.85[CEU][hapmap]
rs7562292	0.82[CEU][hapmap]
rs7570629	0.82[CEU][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2968822	RTN4	cis	Whole Blood	GTEx
rs2968822	RTN4	cis	Artery Aorta	GTEx
rs2968822	RTN4	cis	Esophagus Mucosa	GTEx
rs2968822	RTN4	cis	Artery Tibial	GTEx
rs2968822	RTN4	cis	Skin Sun Exposed Lower leg	GTEx
rs2968822	RTN4	cis	Nerve Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55299200-55318000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:55304400-55309200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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