Variant report

Variant	rs2972692
Chromosome Location	chr5:113016914-113016915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10067380	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12719166	0.95[EUR][1000 genomes]
rs13188804	0.84[EUR][1000 genomes]
rs1482348	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1864065	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2016138	0.88[EUR][1000 genomes]
rs3985034	0.82[EUR][1000 genomes]
rs4235747	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4274969	0.95[EUR][1000 genomes]
rs4428398	0.95[EUR][1000 genomes]
rs4469191	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4501334	0.92[EUR][1000 genomes]
rs4537050	0.95[EUR][1000 genomes]
rs4549518	0.85[CEU][hapmap]
rs4705468	0.95[EUR][1000 genomes]
rs4705584	0.84[EUR][1000 genomes]
rs6881153	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6896340	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7734886	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113012600-113018400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:113015200-113018000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:113015200-113018400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:113015400-113018000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:113015400-113018000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:113015400-113018400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:113015600-113018000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:113015600-113018400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:113015800-113018400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:113016000-113018600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:113016000-113018800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:113016600-113018400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:113016600-113026000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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