Variant report

Variant	rs4705584
Chromosome Location	chr5:113082206-113082207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10067380	0.89[EUR][1000 genomes]
rs12719166	0.89[EUR][1000 genomes]
rs13188804	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1384275	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1482348	0.89[EUR][1000 genomes]
rs1864065	0.84[EUR][1000 genomes]
rs2016138	0.83[EUR][1000 genomes]
rs2972692	0.84[EUR][1000 genomes]
rs3985034	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4235747	0.89[EUR][1000 genomes]
rs4274969	0.89[EUR][1000 genomes]
rs4428398	0.89[EUR][1000 genomes]
rs4469191	0.89[EUR][1000 genomes]
rs4501334	0.92[EUR][1000 genomes]
rs4537050	0.89[EUR][1000 genomes]
rs4705468	0.89[EUR][1000 genomes]
rs4705581	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6875752	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6881153	0.89[EUR][1000 genomes]
rs6896340	0.83[EUR][1000 genomes]
rs7734886	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462390	chr5:113076095-113181289	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv471041	chr5:113076095-113181289	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599408	chr5:113076095-113181289	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432799	chr5:113077017-113150101	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv599409	chr5:113079354-113184211	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1018938	chr5:113080567-113185361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113079800-113083600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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