Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37878774..37881527-chr5:37886375..37888664,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2910745	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2973100	1.00[EUR][1000 genomes]
rs2973101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2973103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2973104	1.00[EUR][1000 genomes]
rs879971	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028115	chr5:37882426-37936352	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37875600-37888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:37883200-37888400	Weak transcription	Osteobl	bone
3	chr5:37883400-37888400	Weak transcription	NH-A	brain
4	chr5:37883400-37889600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:37886400-37889200	Enhancers	NHEK	skin
6	chr5:37886400-37890800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:37886600-37888000	Weak transcription	HMEC	breast
8	chr5:37886800-37888400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:37886800-37888400	Weak transcription	NHDF-Ad	bronchial
10	chr5:37886800-37888600	Weak transcription	Esophagus	oesophagus
11	chr5:37887000-37888200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:37887000-37888600	Weak transcription	HSMM	muscle
13	chr5:37887000-37889800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:37887000-37892400	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:37887200-37888200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:37887200-37889200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:37887200-37892600	Weak transcription	Ovary	ovary
18	chr5:37887400-37888400	Weak transcription	Fetal Stomach	stomach
19	chr5:37887400-37888400	Weak transcription	HSMMtube	muscle
20	chr5:37887800-37890800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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