Variant report

Variant	rs879971
Chromosome Location	chr5:37882954-37882955
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2910745	1.00[EUR][1000 genomes]
rs2973100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2973101	1.00[EUR][1000 genomes]
rs2973102	1.00[EUR][1000 genomes]
rs2973103	1.00[EUR][1000 genomes]
rs2973104	1.00[EUR][1000 genomes]
rs73750397	1.00[AMR][1000 genomes]
rs73750399	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028115	chr5:37882426-37936352	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37875600-37888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:37882400-37883400	Enhancers	Liver	Liver
3	chr5:37882600-37883200	Enhancers	Osteobl	bone
4	chr5:37882600-37883400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:37882800-37883200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:37882800-37883200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:37882800-37883200	Bivalent Enhancer	HepG2	liver
8	chr5:37882800-37883400	Enhancers	NH-A	brain
9	chr5:37882800-37883800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:37882800-37883800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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