Variant report

Variant	rs297558
Chromosome Location	chr8:96167634-96167635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96166819..96170014-chr8:96194693..96197892,3	K562	blood:
2	chr8:96166229..96168914-chr8:96267692..96269921,2	K562	blood:
3	chr8:95958416..95961526-chr8:96166017..96168571,3	MCF-7	breast:
4	chr8:96159139..96162983-chr8:96165859..96168467,3	K562	blood:
5	chr8:96158403..96160639-chr8:96166408..96168467,2	K562	blood:
6	chr8:96166402..96170248-chr8:96170840..96172689,3	MCF-7	breast:
7	chr8:96166764..96169132-chr8:96179225..96180943,2	MCF-7	breast:
8	chr8:96161791..96169135-chr8:96169356..96174766,9	MCF-7	breast:
9	chr8:96162967..96165619-chr8:96165890..96168034,2	MCF-7	breast:
10	chr8:96164336..96168740-chr8:96176663..96180885,5	K562	blood:
11	chr8:96156340..96158297-chr8:96166610..96168384,2	K562	blood:
12	chr8:96166537..96168297-chr8:96201456..96204172,2	MCF-7	breast:
13	chr8:96166819..96169374-chr8:96194693..96197370,2	K562	blood:

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1320165	1.00[YRI][hapmap]
rs2254651	1.00[YRI][hapmap]
rs2599717	1.00[YRI][hapmap]
rs2678830	1.00[YRI][hapmap]
rs297553	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297556	1.00[AFR][1000 genomes]
rs297560	1.00[YRI][hapmap]
rs471691	1.00[YRI][hapmap]
rs538963	1.00[YRI][hapmap]
rs894154	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96147200-96172000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:96147800-96172200	Weak transcription	HSMM	muscle
3	chr8:96148400-96171600	Weak transcription	Fetal Stomach	stomach
4	chr8:96150400-96169000	Weak transcription	Fetal Kidney	kidney
5	chr8:96150400-96169000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:96150400-96179200	Weak transcription	Fetal Lung	lung
7	chr8:96158200-96170800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:96161600-96168800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:96162200-96168000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr8:96162400-96172200	Weak transcription	Spleen	Spleen
11	chr8:96162400-96178800	Weak transcription	NH-A	brain
12	chr8:96162800-96171400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:96163200-96175400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:96163400-96169000	Weak transcription	HMEC	breast
15	chr8:96163600-96171400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:96163800-96171000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:96164000-96169800	Weak transcription	Fetal Intestine Small	intestine
18	chr8:96164000-96171000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:96164200-96171400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:96164200-96171600	Weak transcription	Osteobl	bone
21	chr8:96164400-96169200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:96164400-96171200	Weak transcription	Brain Germinal Matrix	brain
23	chr8:96164600-96171800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:96164600-96174800	Weak transcription	HUVEC	blood vessel
25	chr8:96164800-96175000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr8:96165000-96171000	Weak transcription	HSMMtube	muscle
27	chr8:96165000-96171800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:96165000-96174600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr8:96165200-96168200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr8:96165200-96174400	Weak transcription	Dnd41	blood
31	chr8:96165400-96171000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:96165600-96174600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr8:96165800-96169000	Weak transcription	Adipose Nuclei	Adipose
34	chr8:96165800-96169800	Genic enhancers	Primary B cells from cord blood	blood
35	chr8:96165800-96170400	Weak transcription	Stomach Mucosa	stomach
36	chr8:96165800-96172000	Weak transcription	Aorta	Aorta
37	chr8:96165800-96175000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr8:96166000-96175000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr8:96166400-96167800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr8:96166400-96169400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr8:96166400-96169600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr8:96166400-96169800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:96166400-96170200	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr8:96166600-96168200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:96166600-96169600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr8:96166600-96169800	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr8:96166800-96170000	Strong transcription	Duodenum Mucosa	Duodenum
48	chr8:96166800-96173800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr8:96167000-96168800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr8:96167000-96169000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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