Variant report

Variant	rs297560
Chromosome Location	chr8:96152146-96152147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96095758..96103345-chr8:96144049..96152228,17	MCF-7	breast:
2	chr8:96151785..96153894-chr8:96159898..96162073,2	K562	blood:
3	chr8:96079846..96082376-chr8:96152010..96153617,2	MCF-7	breast:
4	chr8:96149528..96152300-chr8:96192170..96194138,2	MCF-7	breast:
5	chr8:96150317..96152962-chr8:96247980..96250492,2	K562	blood:
6	chr8:96083657..96085811-chr8:96151412..96153447,2	MCF-7	breast:
7	chr8:95910082..95911889-chr8:96150413..96152348,2	K562	blood:
8	chr8:96148553..96152425-chr8:96162807..96166605,4	MCF-7	breast:
9	chr8:96097174..96099699-chr8:96151326..96153504,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000245080	Chromatin interaction
ENSG00000254248	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1320165	1.00[YRI][hapmap]
rs2254651	1.00[YRI][hapmap]
rs2599717	1.00[YRI][hapmap]
rs2678830	1.00[YRI][hapmap]
rs297553	1.00[YRI][hapmap]
rs297558	1.00[YRI][hapmap]
rs471691	1.00[YRI][hapmap]
rs538963	1.00[YRI][hapmap]
rs894154	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv891207	chr8:96106037-96160914	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96147200-96172000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:96147800-96153800	Weak transcription	Esophagus	oesophagus
3	chr8:96147800-96154800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr8:96147800-96172200	Weak transcription	HSMM	muscle
5	chr8:96148400-96162000	Weak transcription	Lung	lung
6	chr8:96148400-96163600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:96148400-96171600	Weak transcription	Fetal Stomach	stomach
8	chr8:96148600-96161600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:96149200-96159600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:96150000-96152400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:96150000-96154200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:96150200-96152200	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:96150200-96153800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr8:96150200-96154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:96150200-96155200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr8:96150200-96166600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:96150200-96166600	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:96150200-96166600	Weak transcription	Placenta	Placenta
19	chr8:96150400-96152200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:96150400-96152200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:96150400-96152200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:96150400-96152200	Weak transcription	Aorta	Aorta
23	chr8:96150400-96152200	Weak transcription	Brain Anterior Caudate	brain
24	chr8:96150400-96152200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:96150400-96152200	Weak transcription	Fetal Thymus	thymus
26	chr8:96150400-96152200	Weak transcription	Gastric	stomach
27	chr8:96150400-96152200	Weak transcription	Psoas Muscle	Psoas
28	chr8:96150400-96152200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:96150400-96152200	Weak transcription	Spleen	Spleen
30	chr8:96150400-96152200	Weak transcription	A549	lung
31	chr8:96150400-96152200	Weak transcription	Hela-S3	cervix
32	chr8:96150400-96152400	Weak transcription	Brain Angular Gyrus	brain
33	chr8:96150400-96152400	Weak transcription	Brain Substantia Nigra	brain
34	chr8:96150400-96152400	Weak transcription	Colon Smooth Muscle	Colon
35	chr8:96150400-96152400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr8:96150400-96152400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr8:96150400-96152400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr8:96150400-96152600	Weak transcription	Adipose Nuclei	Adipose
39	chr8:96150400-96152600	Weak transcription	Fetal Intestine Small	intestine
40	chr8:96150400-96152600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr8:96150400-96152800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr8:96150400-96153000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr8:96150400-96153200	Weak transcription	Colonic Mucosa	Colon
44	chr8:96150400-96153400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:96150400-96153800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:96150400-96154200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr8:96150400-96154600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr8:96150400-96154600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:96150400-96155600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr8:96150400-96155800	Weak transcription	HMEC	breast

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