Variant report

Variant	rs2975909
Chromosome Location	chr9:72687642-72687643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2975903	0.87[AFR][1000 genomes]
rs3015172	1.00[AFR][1000 genomes]
rs3015183	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72667600-72688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:72670000-72688400	Weak transcription	NH-A	brain
3	chr9:72676600-72694000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:72676800-72688200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:72676800-72688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:72677000-72689000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:72677600-72694000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:72680000-72689200	Enhancers	Colon Smooth Muscle	Colon
9	chr9:72683400-72688000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:72683400-72688200	Weak transcription	Osteobl	bone
11	chr9:72684800-72694000	Weak transcription	Adipose Nuclei	Adipose
12	chr9:72685000-72694600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:72685200-72688600	Weak transcription	Ovary	ovary
14	chr9:72685200-72689000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:72685200-72689200	Weak transcription	Fetal Stomach	stomach
16	chr9:72685200-72692200	Weak transcription	Small Intestine	intestine
17	chr9:72685200-72695800	Weak transcription	Aorta	Aorta
18	chr9:72685200-72696000	Weak transcription	Right Atrium	heart
19	chr9:72685400-72688400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:72685400-72690400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:72686600-72688200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:72686600-72688400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:72687200-72694800	Strong transcription	HSMMtube	muscle
24	chr9:72687400-72688000	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:72687400-72688600	Enhancers	HSMM	muscle
26	chr9:72687600-72688000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:72687600-72688400	Weak transcription	Rectal Smooth Muscle	rectum

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