Variant report

Variant	rs2975923
Chromosome Location	chr9:72650716-72650717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72649187..72651016-chr9:72654412..72657228,2	K562	blood:
2	chr9:72649187..72651651-chr9:72654412..72657228,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11141404	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72646800-72651000	Weak transcription	NHDF-Ad	bronchial
2	chr9:72646800-72651600	Weak transcription	HMEC	breast
3	chr9:72646800-72653000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:72646800-72653000	Weak transcription	HUVEC	blood vessel
5	chr9:72647400-72657200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:72648000-72653000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:72649200-72652000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:72649400-72653000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:72649400-72653000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:72649400-72653000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:72649400-72653000	Weak transcription	NHEK	skin
12	chr9:72649600-72652800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:72649600-72653000	Weak transcription	Thymus	Thymus
14	chr9:72649800-72653000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:72649800-72653000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:72649800-72653000	Weak transcription	Esophagus	oesophagus
17	chr9:72649800-72653000	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:72649800-72653000	Weak transcription	NH-A	brain
19	chr9:72650000-72651600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:72650000-72651600	Weak transcription	Osteobl	bone
21	chr9:72650000-72651800	Weak transcription	Lung	lung
22	chr9:72650000-72653000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:72650000-72653000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:72650200-72651200	Weak transcription	HSMMtube	muscle
25	chr9:72650200-72653000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:72650200-72653000	Weak transcription	HSMM	muscle
27	chr9:72650400-72652000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:72650600-72653000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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