Variant report

Variant	rs2980888
Chromosome Location	chr8:126507308-126507309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126506743..126511658-chr8:126513008..126519867,6	MCF-7	breast:
2	chr8:126506597..126510662-chr8:126558382..126560579,3	MCF-7	breast:
3	chr8:126496935..126498529-chr8:126505606..126508018,2	MCF-7	breast:
4	chr8:126504178..126505929-chr8:126506616..126508222,2	MCF-7	breast:
5	chr8:126507152..126508926-chr8:126605095..126607004,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2001845	0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2954018	0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2954020	0.84[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2954025	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2954026	0.81[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2954028	0.83[ASN][1000 genomes]
rs2954030	0.85[JPT][hapmap]
rs2954032	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2954033	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2954038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980858	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2980859	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2980862	0.89[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2980867	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2980878	0.81[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2980879	0.85[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2980880	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4351435	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7828113	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7846466	0.81[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126498600-126509200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:126498600-126509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:126502200-126509800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:126504200-126511400	Weak transcription	Primary B cells from cord blood	blood
5	chr8:126505000-126511400	Weak transcription	Spleen	Spleen
6	chr8:126505800-126509200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr8:126506800-126512800	Enhancers	Placenta	Placenta
8	chr8:126507000-126508400	Enhancers	Adipose Nuclei	Adipose
9	chr8:126507200-126507400	Enhancers	Esophagus	oesophagus
10	chr8:126507200-126507600	Flanking Active TSS	Liver	Liver
11	chr8:126507200-126507600	Enhancers	Lung	lung
12	chr8:126507200-126508200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:126507200-126508200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:126507200-126508600	Enhancers	HepG2	liver

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