Variant report

Variant	rs2981136
Chromosome Location	chr8:39919991-39919992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10086014	0.87[EUR][1000 genomes]
rs10086939	0.84[EUR][1000 genomes]
rs10092175	0.87[EUR][1000 genomes]
rs12678264	0.99[ASN][1000 genomes]
rs13255845	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13265509	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269057	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270586	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270901	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274781	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13275833	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13277306	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1383603	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481063	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1481065	0.80[AMR][1000 genomes]
rs1481066	0.80[AMR][1000 genomes]
rs1600689	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1600690	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1600691	0.80[AMR][1000 genomes]
rs2170306	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2929077	0.88[EUR][1000 genomes]
rs2929078	0.87[EUR][1000 genomes]
rs2929080	0.81[EUR][1000 genomes]
rs2929081	0.81[EUR][1000 genomes]
rs2929082	0.81[EUR][1000 genomes]
rs2929083	0.81[EUR][1000 genomes]
rs2929084	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2929085	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2929086	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2929095	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2929100	0.80[AMR][1000 genomes]
rs2955924	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2955925	0.82[EUR][1000 genomes]
rs2955927	0.82[EUR][1000 genomes]
rs2955930	0.80[AMR][1000 genomes]
rs2981129	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981134	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2981135	0.80[AMR][1000 genomes]
rs2981137	0.80[AMR][1000 genomes]
rs2981140	0.80[AMR][1000 genomes]
rs2981177	0.88[EUR][1000 genomes]
rs2981178	0.88[EUR][1000 genomes]
rs2981179	0.84[EUR][1000 genomes]
rs34865389	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34882203	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35723433	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35905112	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4299988	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59707583	0.99[ASN][1000 genomes]
rs60545325	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67207633	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68103082	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9772008	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv967581	chr8:39917856-39928866	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39913000-39939000	Weak transcription	Right Atrium	heart
2	chr8:39915200-39920800	Enhancers	Stomach Mucosa	stomach
3	chr8:39916400-39920000	Enhancers	Duodenum Mucosa	Duodenum
4	chr8:39916400-39920000	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr8:39916600-39920000	Enhancers	Fetal Intestine Large	intestine
6	chr8:39917600-39920000	Enhancers	Pancreas	Pancrea
7	chr8:39918600-39920200	Enhancers	Gastric	stomach
8	chr8:39919200-39920000	Genic enhancers	Fetal Intestine Small	intestine
9	chr8:39919400-39921400	Enhancers	HepG2	liver
10	chr8:39919800-39920000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:39919800-39920200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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