Variant report

Variant	rs13274781
Chromosome Location	chr8:39938967-39938968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:39928502..39931425-chr8:39937811..39939338,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10958600	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs12678264	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13255845	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13265509	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13269057	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13270586	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13270901	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13275833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277306	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1383603	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1471559	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs1471561	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1481063	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1600689	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1600690	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2170306	0.82[ASN][1000 genomes]
rs2929095	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2981129	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2981134	0.88[ASN][1000 genomes]
rs2981136	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34865389	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34882203	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35723433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35905112	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4299988	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59707583	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60545325	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67207633	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68103082	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7846287	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39913000-39939000	Weak transcription	Right Atrium	heart
2	chr8:39937800-39939000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:39937800-39939800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:39938000-39939400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:39938000-39939600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:39938000-39939600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:39938200-39939000	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr8:39938200-39939000	Enhancers	Fetal Lung	lung
9	chr8:39938200-39939000	Enhancers	Ovary	ovary
10	chr8:39938200-39939000	Enhancers	HepG2	liver
11	chr8:39938200-39939600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:39938200-39939600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:39938200-39939800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:39938200-39939800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr8:39938400-39939200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:39938400-39939200	Enhancers	Brain Germinal Matrix	brain
17	chr8:39938400-39939600	Enhancers	Fetal Brain Female	brain
18	chr8:39938600-39939000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:39938600-39939400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:39938800-39939000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:39938800-39939000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:39938800-39939000	Flanking Active TSS	Brain Cingulate Gyrus	brain
23	chr8:39938800-39939000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr8:39938800-39939000	Enhancers	Brain Substantia Nigra	brain
25	chr8:39938800-39939000	Enhancers	Rectal Smooth Muscle	rectum
26	chr8:39938800-39939000	Active TSS	Stomach Smooth Muscle	stomach
27	chr8:39938800-39939000	Flanking Active TSS	A549	lung
28	chr8:39938800-39939200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:39938800-39939200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:39938800-39939200	Enhancers	Liver	Liver
31	chr8:39938800-39939200	Enhancers	Colon Smooth Muscle	Colon
32	chr8:39938800-39939200	Enhancers	Placenta Amnion	Placenta Amnion
33	chr8:39938800-39939400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr8:39938800-39939400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr8:39938800-39939400	Active TSS	Brain Angular Gyrus	brain
36	chr8:39938800-39939400	Enhancers	Fetal Intestine Small	intestine
37	chr8:39938800-39939400	Enhancers	Fetal Stomach	stomach
38	chr8:39938800-39939600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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