Variant report

Variant	rs7846287
Chromosome Location	chr8:39955095-39955096
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10086939	0.82[ASN][1000 genomes]
rs10092175	0.80[ASN][1000 genomes]
rs10958600	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12678264	0.86[EUR][1000 genomes]
rs13255845	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13265509	0.89[EUR][1000 genomes]
rs13269057	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13270586	0.89[EUR][1000 genomes]
rs13270901	0.89[EUR][1000 genomes]
rs13274781	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13275833	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13277306	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1471559	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1471561	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1600689	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1600690	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2929077	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2929078	0.85[ASN][1000 genomes]
rs2929080	0.84[ASN][1000 genomes]
rs2929081	0.84[ASN][1000 genomes]
rs2929082	0.85[ASN][1000 genomes]
rs2929083	0.82[ASN][1000 genomes]
rs2929084	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2929085	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2929086	0.91[ASN][1000 genomes]
rs2955924	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2955925	0.82[ASN][1000 genomes]
rs2955926	0.82[ASN][1000 genomes]
rs2955927	0.83[ASN][1000 genomes]
rs2981177	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2981178	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2981179	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34865389	0.89[EUR][1000 genomes]
rs34882203	0.89[EUR][1000 genomes]
rs35723433	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35905112	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4299988	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4737039	0.83[ASN][1000 genomes]
rs59707583	0.86[EUR][1000 genomes]
rs60545325	0.89[EUR][1000 genomes]
rs67207633	0.89[EUR][1000 genomes]
rs68103082	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9772008	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1034355	chr8:39942179-39961432	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39950200-39955600	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:39951000-39955400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:39951000-39955600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:39951000-39958600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:39951000-39968000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:39951200-39955400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:39951200-39955600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:39952000-39955200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:39952200-39955600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:39952400-39955200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:39952600-39955200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:39952600-39955200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:39952600-39955600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:39952600-39956400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:39952600-39957000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:39952600-39957000	Weak transcription	Placenta	Placenta
17	chr8:39954800-39958000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr8:39955000-39955400	Weak transcription	Stomach Mucosa	stomach
19	chr8:39955000-39957000	Enhancers	A549	lung

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