Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1158165	0.83[AFR][1000 genomes]
rs1158166	0.92[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs1983713	0.83[AFR][1000 genomes]
rs1983714	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs2145237	1.00[AMR][1000 genomes]
rs2208282	1.00[AMR][1000 genomes]
rs2208290	0.83[AFR][1000 genomes]
rs238645	1.00[MEX][hapmap]
rs238646	1.00[MEX][hapmap]
rs238650	1.00[MEX][hapmap]
rs2405391	1.00[MEX][hapmap]
rs2424568	0.84[AFR][1000 genomes]
rs2424578	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs2424579	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes]
rs2983616	1.00[AMR][1000 genomes]
rs2983617	1.00[AMR][1000 genomes]
rs2983618	0.81[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2983625	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3004134	1.00[AMR][1000 genomes]
rs3004138	0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs3004140	0.84[AFR][1000 genomes]
rs3004143	0.84[AFR][1000 genomes]
rs3004146	1.00[ASW][hapmap];0.96[LWK][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3004147	0.86[YRI][hapmap]
rs911121	1.00[MEX][hapmap]
rs911123	1.00[MEX][hapmap]
rs911127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23579000-23582400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr20:23580200-23582400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr20:23581600-23584600	Enhancers	Fetal Thymus	thymus
4	chr20:23581800-23582400	Weak transcription	Placenta	Placenta
5	chr20:23582000-23583000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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