Variant report

Variant	rs2983642
Chromosome Location	chr20:23590792-23590793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1983712	1.00[AMR][1000 genomes]
rs2424572	0.92[AFR][1000 genomes]
rs3004147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23583400-23594000	Weak transcription	Right Atrium	heart
2	chr20:23587000-23595600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr20:23587800-23594000	Weak transcription	Colon Smooth Muscle	Colon
4	chr20:23588200-23593400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr20:23588200-23594800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:23589000-23590800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr20:23589800-23590800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr20:23590000-23590800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr20:23590000-23591200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr20:23590000-23594000	Weak transcription	Brain Hippocampus Middle	brain
11	chr20:23590400-23591200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr20:23590400-23595000	Weak transcription	Brain Anterior Caudate	brain
13	chr20:23590600-23591400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr20:23590600-23592200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr20:23590600-23592600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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