Variant report

Variant	rs2985030
Chromosome Location	chr9:100910494-100910495
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100907143..100911530-chr9:100917863..100922713,9	MCF-7	breast:
2	chr9:100891389..100900074-chr9:100905133..100910729,10	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12554318	1.00[ASN][1000 genomes]
rs12554940	1.00[ASN][1000 genomes]
rs2795486	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2795488	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34709283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34891516	1.00[ASN][1000 genomes]
rs6478670	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv893613	chr9:100885779-100943397	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100882000-100917000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:100882600-100915000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:100883000-100926400	Weak transcription	Small Intestine	intestine
4	chr9:100883800-100920000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:100884400-100921000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:100885200-100926200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr9:100889200-100930800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:100891000-100920600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr9:100891000-100930800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:100892200-100920800	Weak transcription	Fetal Brain Female	brain
11	chr9:100892200-100926200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:100893400-100910600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:100896000-100931000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:100897400-100917000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:100897400-100918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:100898400-100916800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:100898400-100931200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:100899200-100930600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:100900200-100911000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:100900200-100918200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr9:100900400-100910800	Weak transcription	K562	blood
22	chr9:100900400-100918800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:100900400-100919000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr9:100907000-100912800	Enhancers	Placenta	Placenta
25	chr9:100907000-100917200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr9:100907200-100918400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:100907600-100910600	Enhancers	Fetal Intestine Large	intestine
28	chr9:100908000-100919000	Weak transcription	Thymus	Thymus
29	chr9:100908600-100913000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:100908800-100912400	Weak transcription	Lung	lung
31	chr9:100908800-100913000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:100909000-100916600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:100909000-100926000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:100909200-100911200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr9:100909200-100911800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:100909200-100912400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:100909200-100915600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr9:100909200-100919200	Weak transcription	Fetal Thymus	thymus
39	chr9:100909200-100919600	Weak transcription	Gastric	stomach
40	chr9:100909200-100921800	Weak transcription	Esophagus	oesophagus
41	chr9:100909200-100924200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:100909200-100930800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr9:100909400-100913000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr9:100909400-100917000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:100909400-100920800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:100909400-100933600	Weak transcription	Colonic Mucosa	Colon
47	chr9:100909600-100911200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr9:100909600-100911600	Weak transcription	Primary T cells from cord blood	blood
49	chr9:100909600-100912600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:100909600-100919000	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links