Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101090185..101092371-chr9:101101183..101103989,2	MCF-7	breast:
2	chr9:101086196..101088017-chr9:101089801..101091987,3	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10117265	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10125047	1.00[ASN][1000 genomes]
rs10441752	1.00[CHB][hapmap]
rs10985425	1.00[CHB][hapmap]
rs10985528	1.00[CHB][hapmap]
rs10985573	1.00[CHB][hapmap]
rs12340587	1.00[ASN][1000 genomes]
rs12352986	1.00[CHB][hapmap]
rs16914199	1.00[CHB][hapmap]
rs16915689	1.00[CHB][hapmap]
rs16915747	1.00[ASN][1000 genomes]
rs17690174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985030	1.00[ASN][1000 genomes]
rs34709283	1.00[ASN][1000 genomes]
rs34891516	1.00[ASN][1000 genomes]
rs553139	1.00[CHB][hapmap]
rs55683990	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583115	1.00[CHB][hapmap]
rs644842	1.00[CHB][hapmap]
rs9299277	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv3325750	chr9:101090308-101093680	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101085600-101093800	Weak transcription	Lung	lung
2	chr9:101087200-101093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:101087200-101094000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:101087400-101096000	Weak transcription	Osteobl	bone
5	chr9:101087400-101096400	Weak transcription	NH-A	brain
6	chr9:101089000-101096000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:101089600-101093200	Weak transcription	K562	blood
8	chr9:101090400-101094200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:101090400-101098400	Enhancers	HUVEC	blood vessel
10	chr9:101091000-101095400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:101091200-101092200	Enhancers	HMEC	breast
12	chr9:101091200-101092200	Enhancers	NHEK	skin
13	chr9:101091200-101095200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:101091400-101091800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:101091400-101091800	Weak transcription	NHLF	lung
16	chr9:101091400-101092000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:101091400-101094400	Enhancers	NHDF-Ad	bronchial
18	chr9:101091600-101092000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:101091600-101093400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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