Variant report

Variant	rs16914199
Chromosome Location	chr9:101011129-101011130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100986946..100989189-chr9:101010558..101012631,2	MCF-7	breast:
2	chr9:100955094..100957753-chr9:101010315..101013161,2	MCF-7	breast:
3	chr9:101010838..101012752-chr9:101014329..101016410,2	MCF-7	breast:
4	chr9:100987323..100990186-chr9:101009264..101011823,2	K562	blood:
5	chr9:101010177..101013807-chr9:101023006..101027119,4	K562	blood:
6	chr9:100983664..100985681-chr9:101009334..101011944,2	MCF-7	breast:
7	chr9:101010134..101012336-chr9:101021281..101022782,2	K562	blood:
8	chr9:101010268..101015223-chr9:101016008..101021084,8	K562	blood:
9	chr9:100987323..100989657-chr9:101010085..101011823,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10046819	1.00[ASN][1000 genomes]
rs10114211	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117265	1.00[CHB][hapmap]
rs10217245	1.00[ASN][1000 genomes]
rs10217458	1.00[ASN][1000 genomes]
rs10441752	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10818608	1.00[ASN][1000 genomes]
rs10985425	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10985528	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10985545	1.00[ASN][1000 genomes]
rs10985570	1.00[ASN][1000 genomes]
rs10985573	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10985578	1.00[ASN][1000 genomes]
rs10985730	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339078	1.00[ASN][1000 genomes]
rs12342843	1.00[ASN][1000 genomes]
rs12342968	1.00[ASN][1000 genomes]
rs12347046	1.00[ASN][1000 genomes]
rs12351571	1.00[ASN][1000 genomes]
rs12352986	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914443	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915689	1.00[CHB][hapmap]
rs17690174	1.00[CHB][hapmap]
rs28524952	1.00[ASN][1000 genomes]
rs28578965	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34562398	1.00[ASN][1000 genomes]
rs36074616	1.00[ASN][1000 genomes]
rs41273923	1.00[ASN][1000 genomes]
rs41273925	1.00[ASN][1000 genomes]
rs41283618	1.00[ASN][1000 genomes]
rs4742725	1.00[ASN][1000 genomes]
rs553139	1.00[CHB][hapmap]
rs55974101	1.00[ASN][1000 genomes]
rs57611604	1.00[ASN][1000 genomes]
rs583115	1.00[CHB][hapmap]
rs58371820	1.00[ASN][1000 genomes]
rs59519660	1.00[ASN][1000 genomes]
rs61201457	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644842	1.00[CHB][hapmap]
rs6478670	1.00[CHB][hapmap]
rs73488726	0.82[AFR][1000 genomes]
rs73490714	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490718	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490720	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490723	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490727	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490728	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299277	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100989600-101016000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:100991400-101015400	Weak transcription	Brain Anterior Caudate	brain
3	chr9:100991800-101011400	Weak transcription	Right Ventricle	heart
4	chr9:100992200-101012800	Weak transcription	Brain Substantia Nigra	brain
5	chr9:100992200-101016000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:100993400-101012600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:100995000-101016600	Weak transcription	Brain Angular Gyrus	brain
8	chr9:100995800-101011200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:100996000-101012400	Weak transcription	Fetal Stomach	stomach
10	chr9:100996000-101016000	Weak transcription	Pancreas	Pancrea
11	chr9:100996200-101017200	Weak transcription	Ovary	ovary
12	chr9:100996600-101011200	Weak transcription	Thymus	Thymus
13	chr9:101003800-101011200	Weak transcription	Gastric	stomach
14	chr9:101004200-101015800	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:101004200-101017200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:101005200-101017200	Weak transcription	Brain Germinal Matrix	brain
17	chr9:101006400-101014000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:101006600-101014000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:101006600-101016600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:101006800-101011400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:101006800-101016800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr9:101007000-101013800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:101008000-101012600	Weak transcription	HepG2	liver
24	chr9:101008400-101012400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr9:101008800-101013600	Enhancers	Placenta	Placenta
26	chr9:101008800-101013800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr9:101009000-101017200	Weak transcription	Aorta	Aorta
28	chr9:101009200-101011200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:101009200-101015800	Weak transcription	Stomach Mucosa	stomach
30	chr9:101009200-101016600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:101009400-101012600	Enhancers	Primary hematopoietic stem cells	blood
32	chr9:101010200-101011200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr9:101010200-101011600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr9:101010200-101011800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:101010200-101011800	Flanking Active TSS	Hela-S3	cervix
36	chr9:101010200-101012000	Enhancers	HUVEC	blood vessel
37	chr9:101010200-101012000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr9:101010200-101012600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:101010200-101012600	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr9:101010200-101013400	Genic enhancers	HMEC	breast
41	chr9:101010200-101014000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:101010200-101014200	Genic enhancers	Osteobl	bone
43	chr9:101010200-101015000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:101010200-101015200	Enhancers	A549	lung
45	chr9:101010200-101015600	Enhancers	NHDF-Ad	bronchial
46	chr9:101010200-101016600	Enhancers	Primary B cells from cord blood	blood
47	chr9:101010400-101011200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:101010400-101011600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr9:101010400-101011600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:101010400-101011600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links