Variant report

Variant	rs10985528
Chromosome Location	chr9:100991102-100991103
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10046819	1.00[ASN][1000 genomes]
rs10114211	1.00[ASN][1000 genomes]
rs10117265	1.00[CHB][hapmap]
rs10217245	1.00[ASN][1000 genomes]
rs10217458	1.00[ASN][1000 genomes]
rs10441752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10818608	1.00[ASN][1000 genomes]
rs10985425	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10985545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985570	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985730	1.00[ASN][1000 genomes]
rs12339078	1.00[ASN][1000 genomes]
rs12342843	1.00[ASN][1000 genomes]
rs12342968	1.00[ASN][1000 genomes]
rs12347046	1.00[ASN][1000 genomes]
rs12351571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352986	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914199	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914443	1.00[ASN][1000 genomes]
rs16915689	1.00[CHB][hapmap]
rs17690174	1.00[CHB][hapmap]
rs28524952	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28578965	1.00[ASN][1000 genomes]
rs34562398	1.00[ASN][1000 genomes]
rs36074616	1.00[ASN][1000 genomes]
rs41273923	1.00[ASN][1000 genomes]
rs41273925	1.00[ASN][1000 genomes]
rs41283618	1.00[ASN][1000 genomes]
rs4742725	1.00[ASN][1000 genomes]
rs553139	1.00[CHB][hapmap]
rs55974101	1.00[ASN][1000 genomes]
rs57611604	1.00[ASN][1000 genomes]
rs583115	1.00[CHB][hapmap]
rs58371820	1.00[ASN][1000 genomes]
rs59519660	1.00[ASN][1000 genomes]
rs61201457	1.00[ASN][1000 genomes]
rs644842	1.00[CHB][hapmap]
rs6478670	1.00[CHB][hapmap]
rs73490714	1.00[ASN][1000 genomes]
rs73490718	1.00[ASN][1000 genomes]
rs73490720	1.00[ASN][1000 genomes]
rs73490723	1.00[ASN][1000 genomes]
rs73490727	1.00[ASN][1000 genomes]
rs73490728	1.00[ASN][1000 genomes]
rs9299277	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100955800-101003200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:100961400-101001400	Weak transcription	Right Atrium	heart
3	chr9:100968400-100995600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:100968400-100997600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr9:100968600-101010400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:100968800-100998000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:100968800-101011000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr9:100969400-101004800	Weak transcription	Brain Germinal Matrix	brain
9	chr9:100969600-100997200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:100969800-100991800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:100970200-101001600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:100974800-101010600	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:100976400-100998800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:100980200-101010200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:100981800-101010400	Weak transcription	Fetal Thymus	thymus
16	chr9:100982200-100991200	Weak transcription	Fetal Lung	lung
17	chr9:100982800-101004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:100983000-101007200	Weak transcription	Fetal Brain Male	brain
19	chr9:100983200-100992600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:100983200-100996600	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:100983200-100997600	Weak transcription	Fetal Brain Female	brain
22	chr9:100983400-101006200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:100983600-100994000	Weak transcription	Brain Angular Gyrus	brain
24	chr9:100984600-100992000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:100985600-100998200	Genic enhancers	Fetal Intestine Small	intestine
26	chr9:100985800-100993200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:100985800-101002800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:100986000-100995400	Weak transcription	Pancreas	Pancrea
29	chr9:100986000-101006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:100986200-100997600	Weak transcription	HUVEC	blood vessel
31	chr9:100986200-100998800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr9:100986200-100999000	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr9:100986800-100991600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:100987000-100993400	Enhancers	Liver	Liver
35	chr9:100987000-100995800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr9:100987000-100997200	Strong transcription	Lung	lung
37	chr9:100987000-100997800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr9:100987200-100992800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:100987200-100993400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:100987200-100993600	Genic enhancers	Placenta	Placenta
41	chr9:100987200-100996400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:100987200-100996800	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr9:100987200-100997400	Strong transcription	Primary T cells from cord blood	blood
44	chr9:100987400-100991400	Strong transcription	Spleen	Spleen
45	chr9:100987400-100991600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:100987400-100991800	Strong transcription	Esophagus	oesophagus
47	chr9:100987400-100993200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:100987400-100994000	Strong transcription	Osteobl	bone
49	chr9:100987400-100996000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr9:100987600-100991800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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