Variant report

Variant	rs16915689
Chromosome Location	chr9:101170247-101170248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101165085..101169504-chr9:101169780..101173319,7	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10117265	1.00[CHB][hapmap]
rs10441752	1.00[CHB][hapmap]
rs10985528	1.00[CHB][hapmap]
rs10985573	1.00[CHB][hapmap]
rs12352986	1.00[CHB][hapmap]
rs16914199	1.00[CHB][hapmap]
rs16915576	1.00[YRI][hapmap]
rs16915579	1.00[YRI][hapmap]
rs16915747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17690174	1.00[CHB][hapmap]
rs553139	1.00[CHB][hapmap]
rs583115	1.00[CHB][hapmap]
rs644842	1.00[CHB][hapmap]
rs6478670	1.00[CHB][hapmap]
rs9299277	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:101156600-101172000	Weak transcription	Fetal Brain Female	brain
3	chr9:101159000-101172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:101165000-101174600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:101167000-101171800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101167800-101172200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101169000-101171400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:101169200-101170400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:101169200-101170800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr9:101169200-101171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:101169800-101172400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:101169800-101173200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:101170000-101172400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:101170000-101172400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:101170000-101172400	Weak transcription	Fetal Heart	heart
16	chr9:101170200-101170800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:101170200-101172400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:101170200-101172400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr9:101170200-101174000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr9:101170200-101174800	Enhancers	Fetal Thymus	thymus

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