Variant report

Variant	rs16915579
Chromosome Location	chr9:101156399-101156400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10986071	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10986073	0.85[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs10986084	0.89[CHD][hapmap]
rs10986085	0.96[ASN][1000 genomes]
rs10986118	0.83[AMR][1000 genomes]
rs12352643	0.89[CHD][hapmap]
rs16915442	0.86[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs16915478	0.88[AFR][1000 genomes]
rs16915576	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16915623	0.83[AMR][1000 genomes]
rs16915689	1.00[YRI][hapmap]
rs17696686	0.86[JPT][hapmap]
rs2304388	0.86[JPT][hapmap]
rs7032844	0.89[CHD][hapmap]
rs7042831	0.86[JPT][hapmap]
rs7044824	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs7046871	0.86[JPT][hapmap]
rs7047634	1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs73497003	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3356278	chr9:101153231-101157729	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101143200-101157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101149800-101158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:101150400-101157800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101155000-101157800	Weak transcription	Primary B cells from cord blood	blood
7	chr9:101155000-101157800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr9:101156000-101156400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:101156000-101156600	Strong transcription	Fetal Brain Female	brain
10	chr9:101156200-101156600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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