Variant report

Variant	rs16915442
Chromosome Location	chr9:101144927-101144928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10818828	0.82[JPT][hapmap]
rs10818832	0.82[JPT][hapmap]
rs10818833	0.82[JPT][hapmap]
rs10986041	0.82[JPT][hapmap]
rs10986060	0.82[JPT][hapmap]
rs10986062	0.85[JPT][hapmap]
rs10986071	1.00[JPT][hapmap]
rs10986073	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10986084	0.89[CHD][hapmap];0.85[JPT][hapmap]
rs10986085	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12352643	0.89[CHD][hapmap]
rs16915579	0.86[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs585325	0.85[JPT][hapmap]
rs7032844	0.89[CHD][hapmap]
rs7044824	0.89[CHD][hapmap]
rs7047634	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73497003	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
3	chr9:101137000-101145000	Enhancers	Primary B cells from cord blood	blood
4	chr9:101143200-101145600	Weak transcription	K562	blood
5	chr9:101143200-101148600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:101143200-101156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:101143200-101157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:101143400-101145600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:101143400-101148800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:101144400-101152800	Weak transcription	Brain Angular Gyrus	brain
12	chr9:101144600-101147600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr9:101144600-101147600	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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