Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:101148277..101150197-chr9:101151452..101153098,2	K562	blood:
2	chr9:101134634..101137375-chr9:101146278..101148960,2	K562	blood:
3	chr9:101082003..101083650-chr9:101148288..101150521,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10818832	0.82[JPT][hapmap]
rs10818833	0.82[JPT][hapmap]
rs10986060	0.82[JPT][hapmap]
rs10986062	0.85[JPT][hapmap]
rs10986071	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10986073	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10986084	0.85[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs10986085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12006182	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs16915442	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16915579	1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs3205936	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs55739315	0.95[AFR][1000 genomes]
rs55745247	0.80[AFR][1000 genomes]
rs56070637	0.90[AFR][1000 genomes]
rs56281459	0.84[AFR][1000 genomes]
rs56326520	0.95[AFR][1000 genomes]
rs585325	0.85[JPT][hapmap]
rs59263286	0.95[AFR][1000 genomes]
rs6478702	0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs7024796	0.94[AFR][1000 genomes]
rs7025048	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7031472	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs7044961	0.82[YRI][hapmap]
rs7044963	0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs7045221	0.84[AFR][1000 genomes]
rs73497003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73497005	0.95[AFR][1000 genomes]
rs73497010	0.95[AFR][1000 genomes]
rs73502819	0.83[AFR][1000 genomes]
rs73655418	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
3	chr9:101143200-101156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:101143200-101157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:101144400-101152800	Weak transcription	Brain Angular Gyrus	brain
7	chr9:101147400-101152000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101147600-101149000	Enhancers	Primary B cells from cord blood	blood
9	chr9:101147600-101149000	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:101148600-101149400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:101148600-101149400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:101148600-101149800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr9:101148600-101150400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:101148800-101149600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:101148800-101151800	Weak transcription	H9 Cell Line	embryonic stem cell

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