Variant report

Variant	rs56281459
Chromosome Location	chr9:101145502-101145503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101142401..101145561-chr9:101146082..101148768,4	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10118761	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10120040	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10120099	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10122943	0.83[EUR][1000 genomes]
rs10760298	0.88[ASN][1000 genomes]
rs10818857	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10818863	0.88[ASN][1000 genomes]
rs10986076	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10986078	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10986080	0.85[EUR][1000 genomes]
rs10986084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10986085	0.84[AFR][1000 genomes]
rs12344879	0.83[EUR][1000 genomes]
rs12346403	0.86[EUR][1000 genomes]
rs12352641	0.87[ASN][1000 genomes]
rs12352643	0.87[ASN][1000 genomes]
rs17696686	0.88[ASN][1000 genomes]
rs2304388	0.89[ASN][1000 genomes]
rs3780421	0.91[ASN][1000 genomes]
rs55739315	0.80[AFR][1000 genomes]
rs56326520	0.80[AFR][1000 genomes]
rs57298260	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57686796	0.82[EUR][1000 genomes]
rs59263286	0.80[AFR][1000 genomes]
rs62574569	0.86[EUR][1000 genomes]
rs62576564	0.82[EUR][1000 genomes]
rs7031472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7032844	0.87[ASN][1000 genomes]
rs7041599	0.88[ASN][1000 genomes]
rs7042831	0.88[ASN][1000 genomes]
rs7044824	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7044961	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7045221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7046871	0.88[ASN][1000 genomes]
rs7047634	0.84[AFR][1000 genomes]
rs724890	0.89[ASN][1000 genomes]
rs73497003	0.84[AFR][1000 genomes]
rs73497005	0.80[AFR][1000 genomes]
rs73497010	0.80[AFR][1000 genomes]
rs73655418	0.80[AFR][1000 genomes]
rs9886725	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
3	chr9:101143200-101145600	Weak transcription	K562	blood
4	chr9:101143200-101148600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:101143200-101156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:101143200-101157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:101143400-101145600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101143400-101148800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:101144400-101152800	Weak transcription	Brain Angular Gyrus	brain
11	chr9:101144600-101147600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr9:101144600-101147600	Weak transcription	GM12878-XiMat	blood
13	chr9:101145000-101147600	Weak transcription	Primary B cells from cord blood	blood

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