Variant report

Variant	rs724890
Chromosome Location	chr9:101151382-101151383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101141985..101144265-chr9:101150163..101153760,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10115570	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10118761	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10120040	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120099	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122943	1.00[CEU][hapmap]
rs10125683	0.81[EUR][1000 genomes]
rs10760298	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10818832	0.93[CEU][hapmap]
rs10818833	0.93[CEU][hapmap]
rs10818857	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10818863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10818876	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10986060	0.93[CEU][hapmap]
rs10986084	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs12340823	0.93[CEU][hapmap]
rs12352641	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12352643	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16915331	0.93[CEU][hapmap]
rs17696686	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17768880	0.91[CEU][hapmap]
rs2304388	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780421	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56281459	0.89[ASN][1000 genomes]
rs57298260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7029062	0.83[CEU][hapmap]
rs7031472	1.00[CEU][hapmap];0.91[ASN][1000 genomes]
rs7032844	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7041599	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7042831	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7044824	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7044961	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045221	1.00[ASN][1000 genomes]
rs7046871	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9886725	1.00[CEU][hapmap]
rs9886874	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
3	chr9:101143200-101156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:101143200-101157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:101144400-101152800	Weak transcription	Brain Angular Gyrus	brain
7	chr9:101147400-101152000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101148800-101151800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:101149000-101153800	Weak transcription	Primary B cells from cord blood	blood
10	chr9:101149800-101151600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:101149800-101158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:101150400-101157800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:101151000-101153600	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links