Variant report

Variant	rs10818876
Chromosome Location	chr9:101162635-101162636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101161715..101164847-chr9:101165982..101168769,3	K562	blood:
2	chr9:101151415..101154208-chr9:101160547..101163160,3	K562	blood:
3	chr9:101161674..101164575-chr9:101172101..101174327,2	MCF-7	breast:
4	chr9:101158409..101161394-chr9:101161512..101163546,2	K562	blood:
5	chr9:101074908..101076596-chr9:101160590..101163322,2	MCF-7	breast:
6	chr9:101162114..101162737-chr9:101285498..101286054,2	MCF-7	breast:
7	chr9:101161231..101163168-chr9:101166870..101168639,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10115570	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10118761	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10120040	0.81[AMR][1000 genomes]
rs10120099	0.81[AMR][1000 genomes]
rs10122943	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap]
rs10125683	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10429522	0.83[CHD][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs10760298	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10818832	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs10818833	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs10818857	0.81[AMR][1000 genomes]
rs10818863	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10818896	0.86[CHB][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap]
rs10986060	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs10986084	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10986125	0.92[GIH][hapmap]
rs12235930	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs12340823	0.93[CEU][hapmap]
rs12352641	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12352643	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16915331	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs17696686	1.00[CEU][hapmap]
rs17768880	0.90[CEU][hapmap]
rs2304388	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3780421	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs57298260	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59556389	0.87[ASN][1000 genomes]
rs7029062	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs7031472	1.00[CEU][hapmap]
rs7032844	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7034300	0.86[CHD][hapmap]
rs7041599	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7042831	0.92[CEU][hapmap];0.87[AMR][1000 genomes]
rs7044824	1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs7044961	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs7046871	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs7048744	0.87[CHD][hapmap]
rs724890	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9886725	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs9886874	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10818876	ZNF367	cis	parietal	SCAN
rs10818876	GALNT12	cis	cerebellum	SCAN
rs10818876	HSD17B3	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:101156600-101172000	Weak transcription	Fetal Brain Female	brain
4	chr9:101158600-101163800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:101159000-101164000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:101159000-101172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:101159400-101163800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:101159400-101164000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:101159400-101164600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:101159600-101164000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:101159800-101163600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:101160800-101166600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:101162600-101163000	Enhancers	HMEC	breast

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