Variant report

Variant	rs10429522
Chromosome Location	chr9:101167839-101167840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10115570	0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs10125683	0.91[EUR][1000 genomes]
rs10818876	0.83[CHD][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs10818892	0.91[CEU][hapmap]
rs10818893	0.86[CEU][hapmap]
rs10818896	0.91[CEU][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap]
rs10986125	1.00[CEU][hapmap];0.86[GIH][hapmap]
rs12235930	1.00[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs12352643	0.93[GIH][hapmap]
rs7032844	0.93[GIH][hapmap]
rs7048165	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10429522	ZNF367	cis	parietal	SCAN
rs10429522	HSD17B3	cis	parietal	SCAN
rs10429522	GALNT12	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:101156600-101172000	Weak transcription	Fetal Brain Female	brain
3	chr9:101159000-101172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:101164200-101168600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:101164400-101169000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:101164400-101169400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:101164800-101169000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:101164800-101169200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:101164800-101169200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:101165000-101174600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:101167000-101171800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:101167800-101172200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links