Variant report

Variant	rs10986125
Chromosome Location	chr9:101168637-101168638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10122943	0.92[GIH][hapmap]
rs10429522	1.00[CEU][hapmap];0.86[GIH][hapmap]
rs10818876	0.92[GIH][hapmap]
rs10818892	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs10818893	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs10818896	0.91[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs12235930	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.96[EUR][1000 genomes]
rs12352643	0.92[GIH][hapmap]
rs16915331	1.00[CHD][hapmap]
rs583641	1.00[CHD][hapmap]
rs7032844	0.92[GIH][hapmap]
rs7048165	0.96[EUR][1000 genomes]
rs9886725	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:101156600-101172000	Weak transcription	Fetal Brain Female	brain
3	chr9:101159000-101172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:101164400-101169000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:101164400-101169400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:101164800-101169000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:101164800-101169200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:101164800-101169200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:101165000-101174600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:101167000-101171800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:101167800-101172200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:101168600-101169000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:101168600-101169000	Enhancers	Fetal Muscle Trunk	muscle
14	chr9:101168600-101169400	Enhancers	Fetal Heart	heart
15	chr9:101168600-101169800	Enhancers	Fetal Muscle Leg	muscle
16	chr9:101168600-101170000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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