Variant report

Variant	rs17768880
Chromosome Location	chr9:101134532-101134533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101106377..101108690-chr9:101133845..101135932,2	K562	blood:
2	chr9:101121184..101122748-chr9:101132251..101134952,2	K562	blood:
3	chr9:101122486..101124143-chr9:101132735..101134592,2	MCF-7	breast:
4	chr9:101132158..101134151-chr9:101134451..101136659,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10115570	0.91[CEU][hapmap]
rs10122943	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10818832	1.00[CEU][hapmap]
rs10818833	1.00[CEU][hapmap]
rs10818876	0.90[CEU][hapmap]
rs10986060	1.00[CEU][hapmap]
rs10986076	0.86[EUR][1000 genomes]
rs10986078	0.86[EUR][1000 genomes]
rs10986080	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10986084	0.90[CEU][hapmap]
rs12340823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344879	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12346403	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12352641	0.91[CEU][hapmap]
rs12352643	0.90[CEU][hapmap]
rs16915331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17696686	0.91[CEU][hapmap]
rs2304388	0.91[CEU][hapmap]
rs3780421	0.91[CEU][hapmap]
rs57686796	0.91[EUR][1000 genomes]
rs62574339	0.89[ASN][1000 genomes]
rs62574340	0.89[ASN][1000 genomes]
rs62574341	0.89[ASN][1000 genomes]
rs62574342	0.89[ASN][1000 genomes]
rs62574343	1.00[ASN][1000 genomes]
rs62574358	1.00[ASN][1000 genomes]
rs62574569	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62576560	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62576561	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62576562	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62576564	0.91[EUR][1000 genomes]
rs650545	0.89[ASN][1000 genomes]
rs7031472	0.91[CEU][hapmap]
rs7032844	0.90[CEU][hapmap]
rs7042831	0.82[CEU][hapmap]
rs7044824	0.90[CEU][hapmap]
rs7044961	0.91[CEU][hapmap]
rs7046871	0.91[CEU][hapmap]
rs724890	0.91[CEU][hapmap]
rs72759660	0.89[ASN][1000 genomes]
rs9886725	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs9886874	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101126600-101142600	Weak transcription	Brain Angular Gyrus	brain
2	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
3	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
4	chr9:101130400-101134800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:101130800-101135600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:101131200-101135600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:101131400-101135200	Weak transcription	Osteobl	bone
8	chr9:101131400-101135400	Weak transcription	NH-A	brain
9	chr9:101132600-101134600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:101132800-101142800	Weak transcription	Right Atrium	heart
11	chr9:101133400-101138000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr9:101133400-101139400	Enhancers	Pancreas	Pancrea
13	chr9:101133400-101142400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:101133600-101135800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:101134000-101136000	Enhancers	Fetal Brain Male	brain
16	chr9:101134000-101136600	Enhancers	K562	blood
17	chr9:101134200-101134800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:101134200-101134800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr9:101134200-101134800	Bivalent Enhancer	Fetal Stomach	stomach
20	chr9:101134200-101142600	Enhancers	Fetal Intestine Large	intestine
21	chr9:101134400-101134600	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr9:101134400-101134800	Enhancers	Brain Anterior Caudate	brain
23	chr9:101134400-101134800	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr9:101134400-101142400	Enhancers	Fetal Intestine Small	intestine

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