Variant report

Variant	rs57686796
Chromosome Location	chr9:101142592-101142593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101137194..101138709-chr9:101140809..101142702,2	K562	blood:
2	chr9:101141985..101144265-chr9:101150163..101153760,3	K562	blood:
3	chr9:101142401..101145561-chr9:101146082..101148768,4	K562	blood:
4	chr9:101140826..101142668-chr9:101205557..101207140,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10122943	0.92[EUR][1000 genomes]
rs10986076	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986078	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986080	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986084	0.82[EUR][1000 genomes]
rs12340823	0.91[EUR][1000 genomes]
rs12344879	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12346403	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16915331	0.91[EUR][1000 genomes]
rs17768880	0.91[EUR][1000 genomes]
rs56281459	0.82[EUR][1000 genomes]
rs62574569	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62576560	0.91[EUR][1000 genomes]
rs62576561	0.91[EUR][1000 genomes]
rs62576562	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62576564	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031472	0.82[EUR][1000 genomes]
rs7045221	0.80[EUR][1000 genomes]
rs9886725	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886874	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101126600-101142600	Weak transcription	Brain Angular Gyrus	brain
2	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
3	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
4	chr9:101132800-101142800	Weak transcription	Right Atrium	heart
5	chr9:101134200-101142600	Enhancers	Fetal Intestine Large	intestine
6	chr9:101134800-101143000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:101136800-101144600	Enhancers	Primary B cells from peripheral blood	blood
8	chr9:101137000-101145000	Enhancers	Primary B cells from cord blood	blood
9	chr9:101138000-101142600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:101138400-101142600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:101140600-101143200	Enhancers	K562	blood
12	chr9:101142000-101143200	Enhancers	NHDF-Ad	bronchial
13	chr9:101142200-101142600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr9:101142200-101142800	Enhancers	A549	lung
15	chr9:101142200-101143000	Enhancers	Fetal Heart	heart
16	chr9:101142200-101143000	Enhancers	HUVEC	blood vessel
17	chr9:101142200-101143200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr9:101142200-101143200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:101142200-101143200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr9:101142200-101143200	Enhancers	Fetal Kidney	kidney
21	chr9:101142200-101143200	Enhancers	Osteobl	bone
22	chr9:101142200-101143400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:101142200-101143400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:101142200-101143400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:101142400-101142600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:101142400-101142600	Enhancers	Brain Hippocampus Middle	brain
27	chr9:101142400-101142800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:101142400-101142800	Enhancers	Primary hematopoietic stem cells	blood
29	chr9:101142400-101142800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:101142400-101142800	Enhancers	Duodenum Mucosa	Duodenum
31	chr9:101142400-101142800	Flanking Active TSS	Fetal Intestine Small	intestine
32	chr9:101142400-101142800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr9:101142400-101143000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:101142400-101143000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:101142400-101143000	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr9:101142400-101143000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:101142400-101143000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:101142400-101143000	Enhancers	Pancreas	Pancrea
39	chr9:101142400-101143000	Enhancers	HMEC	breast
40	chr9:101142400-101143000	Enhancers	HSMM	muscle
41	chr9:101142400-101143000	Enhancers	HSMMtube	muscle
42	chr9:101142400-101143200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr9:101142400-101143200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr9:101142400-101143200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr9:101142400-101143200	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr9:101142400-101143200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr9:101142400-101143200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:101142400-101143200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:101142400-101143200	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr9:101142400-101143200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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