Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:101146357..101148869-chr9:101551547..101553661,2	K562	blood:
2	chr9:101142401..101145561-chr9:101146082..101148768,4	K562	blood:
3	chr9:101134634..101137375-chr9:101146278..101148960,2	K562	blood:
4	chr9:101146313..101147823-chr9:101149379..101151101,2	K562	blood:

Variant related genes	Relation type
ENSG00000165138	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10122943	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10986076	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986078	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986080	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986084	0.86[EUR][1000 genomes]
rs12340823	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12344879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12346403	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16915331	0.86[EUR][1000 genomes]
rs17768880	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56281459	0.86[EUR][1000 genomes]
rs57686796	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62576560	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62576561	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62576562	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62576564	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031472	0.86[EUR][1000 genomes]
rs7045221	0.84[EUR][1000 genomes]
rs9886725	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886874	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
3	chr9:101143200-101148600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:101143200-101156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:101143200-101157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:101143400-101148800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:101144400-101152800	Weak transcription	Brain Angular Gyrus	brain
9	chr9:101144600-101147600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr9:101144600-101147600	Weak transcription	GM12878-XiMat	blood
11	chr9:101145000-101147600	Weak transcription	Primary B cells from cord blood	blood
12	chr9:101146400-101147400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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