Variant report

Variant	rs10986076
Chromosome Location	chr9:101144411-101144412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101138293..101140287-chr9:101143057..101145119,2	MCF-7	breast:
2	chr9:101142401..101145561-chr9:101146082..101148768,4	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10118761	0.81[AMR][1000 genomes]
rs10120040	0.81[AMR][1000 genomes]
rs10120099	0.81[AMR][1000 genomes]
rs10122943	0.94[EUR][1000 genomes]
rs10818857	0.81[AMR][1000 genomes]
rs10986078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986080	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986084	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12006182	0.81[AFR][1000 genomes]
rs12340823	0.86[EUR][1000 genomes]
rs12344879	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12346403	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16915331	0.86[EUR][1000 genomes]
rs17768880	0.86[EUR][1000 genomes]
rs3205936	0.83[AFR][1000 genomes]
rs55739315	0.84[AFR][1000 genomes]
rs56281459	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56326520	0.84[AFR][1000 genomes]
rs57686796	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59263286	0.84[AFR][1000 genomes]
rs62574569	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62576560	0.86[EUR][1000 genomes]
rs62576561	0.86[EUR][1000 genomes]
rs62576562	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62576564	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024796	0.83[AFR][1000 genomes]
rs7025048	0.83[AFR][1000 genomes]
rs7031472	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7044824	0.81[AMR][1000 genomes]
rs7044961	0.81[AMR][1000 genomes]
rs7045221	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73497005	0.84[AFR][1000 genomes]
rs73497010	0.84[AFR][1000 genomes]
rs73655418	0.84[AFR][1000 genomes]
rs9886725	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886874	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
3	chr9:101136800-101144600	Enhancers	Primary B cells from peripheral blood	blood
4	chr9:101137000-101145000	Enhancers	Primary B cells from cord blood	blood
5	chr9:101142400-101144600	Enhancers	GM12878-XiMat	blood
6	chr9:101143200-101144600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:101143200-101145600	Weak transcription	K562	blood
8	chr9:101143200-101148600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:101143200-101156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:101143200-101157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:101143400-101145600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:101143400-101148800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:101144400-101152800	Weak transcription	Brain Angular Gyrus	brain

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