Variant report

Variant	rs73655418
Chromosome Location	chr9:101142990-101142991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101141985..101144265-chr9:101150163..101153760,3	K562	blood:
2	chr9:101142401..101145561-chr9:101146082..101148768,4	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10986076	0.84[AFR][1000 genomes]
rs10986078	0.84[AFR][1000 genomes]
rs10986084	0.80[AFR][1000 genomes]
rs10986085	0.95[AFR][1000 genomes]
rs12006182	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435263	1.00[EUR][1000 genomes]
rs3205936	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4546761	1.00[EUR][1000 genomes]
rs55739315	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55745247	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56070637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56072170	1.00[EUR][1000 genomes]
rs56135724	0.83[AMR][1000 genomes]
rs56281459	0.80[AFR][1000 genomes]
rs56326520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59263286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60654357	1.00[EUR][1000 genomes]
rs6478702	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7024796	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7025048	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7031472	0.80[AFR][1000 genomes]
rs7044963	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045221	0.80[AFR][1000 genomes]
rs7047634	0.95[AFR][1000 genomes]
rs7048026	1.00[EUR][1000 genomes]
rs73490778	1.00[EUR][1000 genomes]
rs73490781	1.00[EUR][1000 genomes]
rs73490782	1.00[EUR][1000 genomes]
rs73490784	1.00[EUR][1000 genomes]
rs73490792	1.00[EUR][1000 genomes]
rs73490796	1.00[EUR][1000 genomes]
rs73497003	0.95[AFR][1000 genomes]
rs73497005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73502819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7849650	1.00[EUR][1000 genomes]
rs7859650	1.00[EUR][1000 genomes]
rs7865868	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
3	chr9:101134800-101143000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101136800-101144600	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:101137000-101145000	Enhancers	Primary B cells from cord blood	blood
6	chr9:101140600-101143200	Enhancers	K562	blood
7	chr9:101142000-101143200	Enhancers	NHDF-Ad	bronchial
8	chr9:101142200-101143000	Enhancers	Fetal Heart	heart
9	chr9:101142200-101143000	Enhancers	HUVEC	blood vessel
10	chr9:101142200-101143200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr9:101142200-101143200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:101142200-101143200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:101142200-101143200	Enhancers	Fetal Kidney	kidney
14	chr9:101142200-101143200	Enhancers	Osteobl	bone
15	chr9:101142200-101143400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:101142200-101143400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:101142200-101143400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:101142400-101143000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:101142400-101143000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:101142400-101143000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr9:101142400-101143000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:101142400-101143000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:101142400-101143000	Enhancers	Pancreas	Pancrea
24	chr9:101142400-101143000	Enhancers	HMEC	breast
25	chr9:101142400-101143000	Enhancers	HSMM	muscle
26	chr9:101142400-101143000	Enhancers	HSMMtube	muscle
27	chr9:101142400-101143200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr9:101142400-101143200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:101142400-101143200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr9:101142400-101143200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr9:101142400-101143200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:101142400-101143200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:101142400-101143200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:101142400-101143200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr9:101142400-101143200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:101142400-101143200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:101142400-101143200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:101142400-101143200	Enhancers	Fetal Muscle Leg	muscle
39	chr9:101142400-101143200	Enhancers	Fetal Stomach	stomach
40	chr9:101142400-101143200	Enhancers	Placenta Amnion	Placenta Amnion
41	chr9:101142400-101143200	Enhancers	NH-A	brain
42	chr9:101142400-101143200	Enhancers	NHLF	lung
43	chr9:101142400-101143400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:101142400-101143400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:101142400-101143400	Enhancers	Spleen	Spleen
46	chr9:101142400-101143600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:101142400-101143600	Enhancers	Placenta	Placenta
48	chr9:101142400-101143600	Enhancers	Lung	lung
49	chr9:101142400-101144600	Enhancers	GM12878-XiMat	blood
50	chr9:101142600-101143000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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